Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcctccttctaagcctttccttgtttactctatttatttatttgtgatttgttccttatcttcagttattgcttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT

Basic information

species Glycine max
transcript GLYMA15G15270.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 12
gtttcctccttctaagcctttccttgtttactctatttatttatttgtgattt---gttccttatcttcagttattgcttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
|||   |||    |    | |       |   |   || |||  ||||| |||   ||  || | |||| || |    ||  ||||||||||||||||||||||| | ||||| |||| |||||||||  | || ||  |||| ||||| ||||||||||| 
gttggatcccataatttttctaaaaaacttgacgccttgttt-cttgtggttttaggtctctcaccttctgtcaccttttacagGATGTTGTTTTGGCTAGAGTACTAGATGATGCTATTGTTGCAAACTTGAATTCTGTAATCCATGCGAACAATGCCATA

upper sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 11
gtttcctccttctaagcc---tttccttgtttactctatttatttatttgtgatttgttccttatcttcagttattgcttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
||||    |||  | ||     ||  |||||   |   |   | |||||||  | |  | |||| |||   | |    ||||||||||| |||||| |||||||  ||||||||||||| |||||||||||||| |||||||| ||| |||| |||||| ||
gtttggctctttgacgctgaacttgtttgttacttgcctggttgtatttgtagtgtaattcttaccttatttcaacttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATTCCATAATTCATTCAAATAATGCCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactctatttatttatttgtgatttgttccttatcttcagttattgcttttagGATGTTGTTTTGGCTAGAGTATTGGATGAGGCTACTGTTGCAAATCTTAACTCCATAATACATGCAAACAATGCCATT
                                             ttgctttt  CT-rich tract
       tatttatttatttgtg  TA-rich tract