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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatgttctgtttgtctatatcataggttcctggctgtatatttctctaaggactctcttgaatgggatgagggtggggggtggatgtgccaagtgtgagaaattgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC

Basic information

species Glycine max
transcript GLYMA15G12980.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12980.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s1206g00020.t01 (Vitis vinifera), 3'ss of exon 5
gttggcatgttctgtttgtctatatcataggttcctggctgtatatttctctaaggactctcttgaatgggatgagggtggggggtggatgtgccaagtgtgagaaattgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC
                                   |  |||| |  |    |||    ||||               || |||||          ||   | |||||  ||      || |||| || |||  ||     ||||||| ||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||| || || |
----------------------------------gtacctgtttcctaacataaaacttctccca------------gtaggggg----------aaaaataagaaacggtt--ccactcatttgaagttt--tttatcatgtagACCATCAGGCCTTTGTGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCAATATATTTGCCACTGGGAACCAGGACAAGACTTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303520|gb|FG994498.1|FG994498
EST:     TTGTTGGAGACTACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
EST: gi|192305848|gb|FG995426.1|FG995426
EST:     CTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: CTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
EST: gi|193462959|gb|FK427724.1|FK427724
EST:     TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
EST: gi|17024037|gb|BM095071.1|BM095071
EST:     TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGC
genomic: TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGC
EST: gi|58016977|gb|CX703719.1|CX703719
EST:     TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
EST: gi|58016661|gb|CX703403.1|CX703403
EST:     TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
EST: gi|192305847|gb|FG995425.1|FG995425
EST:     CTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: CTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgttggcatgt ... gtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccaagtgtgagaaattgtgaatgtctaattttaattttgattgtctttgtagACTATCACACCTTTTCGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCCACATATTTGCTACTGGGAACCAAGACAAAACATGTC
                                           ttgtcttt  CT-rich tract
              aaattgtgaatgtcta  TA-rich tract