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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGCTCTTTAAACAAGGGAACAACGACGCACCTGAACTGCAAATTGTGTTAA

Basic information

species Glycine max
transcript GLYMA15G12220.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12220.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0405g00020.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatg-tgtgttgtgattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGCTCTTTAAACAAGGGAACAACGACGCACCTGAA--CTGCAAATTGTGTTAA
                  | |||    |   |  | |     ||  |||| ||| ||    ||   | |    ||  ||  |||   |    ||||||||||||| ||||| || ||||||||||||||  |||| |||||||  || ||  || | || || |  | | |    ||    |||   | |||||   
------------------gtataaaagaaaagactctgg-attaataattttca-ttagcaatctttaacagtatcctgaattgaactgtcacagAGGATGAACAGTTTGAGGCAGACAAAGCTCAAGTTGTGAGAGAAATTGCTGCCCTGGAACCTAGAGACCGGCCATGAGTGTGCTTTCTGTTGAATGTGTA--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991297|gb|BI316970.1|BI316970
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|31463880|gb|CD405908.1|CD405908
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|21994680|gb|BQ786208.1|BQ786208
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|22932404|gb|BU549543.1|BU549543
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|23734444|gb|BU765448.1|BU765448
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|31474015|gb|CD416043.1|CD416043
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|13312864|gb|BG406515.1|BG406515
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|22928039|gb|BU545178.1|BU545178
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|13479119|gb|BG508462.1|BG508462
EST:     GCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|9901558|gb|BE610526.1|BE610526
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|193352433|gb|FK316829.1|FK316829
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGAT
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGAT
EST: gi|254318122|gb|GR832290.1|GR832290
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|6724491|gb|AW308890.1|AW308890
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACCAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: gi|33389396|gb|CA852603.1|CA852603
EST:     GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG                         AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGCTCTTTAAACAAGGGAACAACGACGCACCTGAACTGCAAATTGTGTTAA
     tcaattat  TA-rich tract