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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctctcatatcagtgaaacttttttatttctccaagatgaagattaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG

Basic information

species Glycine max
transcript GLYMA15G10310.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 3'ss of exon 10
gtgagctctcatatcagtgaaacttttttatttctccaagatgaagattaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG
                || |    | |    ||  |     || || ||   | ||  || || | |     | |  |||  ||   |  | | |||||| |||||| ||| | ||||  |||||    |||||||||||  ||||||||||||| || | | | ||||||||||||||||||||  |||||||||
----------------gtaatttctatcgggtttcct----tgtaggttt--ttcttgttgat-gcgcttactgaaaaaaccattcttcttgttagATGGTATGGTCGAGAGTGAAAACCCATGGCCATCATCCATCACCTCGAGCTGGTTGCTGCGGAGCTCTCTGTGGCACTAAATGGTATATCGCAGGGGGTG

upper sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G18590.2 (Arabidopsis thaliana), 3'ss of exon 10
gtgagctctcatatcagtgaaacttttttatttctccaagatgaagattaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG
|| |   || ||  |  | ||  |||||||||| |      |   ||   | ||  |||   || | |   ||  ||           || |  |||||| ||||||||||||||| |||   || || || |||||||||||||| ||| | ||||| ||| | || || |||||||||||||| || || || |
gt-aatacttattgctat-aatgttttttatttatttggtttcttgac--attgaacatctcttatct--cttggtg-----------tcatcaagATGGTATGGTCAAGAATAAAGATAAGAGGATTTCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAACCGGAGGAG

upper sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
---------gtgagctctcatatca--------gtgaaacttttttatttctccaa-gatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG
         |  | |  || | |          || ||||   |||||||||  || |||||| | ||| ||  |||||  |||   | ||| ||    | || | || | |||||||  |||||||||||| || |   |  |      ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagattaaatgctcattcattgtgtaatttaatgaaagtatatgttctttcagATGGCATGGTCAAGAATAAAAATACATGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGGGGTG
                            atttaat  putative branch site (score: 4)
                                            tgttctttc  putative PPT
                          taatttaatgaaagta  TA-rich tract