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gtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAG
species | Glycine max |
transcript | GLYMA15G10030.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAAEST: gi|193438644|gb|FK401879.1|FK401879
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
EST: GGGATTGAAATGAGTGTTCATGTCTTGACAACTGG GTACTTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAEST: gi|7028742|gb|AW458525.1|AW458525
genomic: GGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTAC-TGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGA
EST: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAAEST: gi|151395410|gb|EV265287.1|EV265287
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
EST: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
tatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAG
atctaat putative branch site (score: 3)
actattttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA