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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgctatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgtttatccatttattttcatgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGTCTTCAGTGTGCCAGGTTTATATACGATGAATTAATAAAG

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06380.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 11
gtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgc---tatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgttta-tccatttattttcatgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGTCTTCAGTGTGCCAGGTTTATATACGATGAATTAATAAAG
||| ||||| |     | || ||           |       ||   || |||| | | ||  ||    | |  ||   || ||||||||   ||| ||   || || |     ||    |||       || | ||  | ||  ||| | |          || |  ||||||||| |||||||| |||||| ||||||||||| | ||| | || |||||||| ||||||||||| || || ||||| ||||| ||| |||||
gtatgtcttatagggctcttgttttttcttcctaagttctctgag--taaattttgaatttatttc---taaacttca-aattgttttgccattatttagcatgcgattttccttttttgtaatc---tctatcttaacatataattagtgctaaccccaaaatatcttcagGTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacataaaaaaaaataccctagaacatgtttatccatttattttcatgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGTCTTCAGTGTGCCAGGTTTATATACGATGAATTAATAAAG
                                        ttttcat  CT-rich tract
                                   atttattttcatgtaa  TA-rich tract