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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataatcagttatcagcctagcattccatttcaagattgggatgaaatggaggagaggataacattttaacttgaatttattttgatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG

Basic information

species Glycine max
transcript GLYMA15G06100.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06100.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
---------gtaagataatcagttatcagcctagcattccatttcaagattgggatga--aatggaggagaggataacattttaacttgaattt--attttgatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG
          |    |  |   |  | |    |  | |        | ||||| ||||  |||     | |    |   ||||    ||  | |  |  |  || |||||  ||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||||
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016987|gb|CX703729.1|CX703729
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
EST: gi|11274766|gb|BF325101.1|BF325101
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGT
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGT
EST: gi|37995958|gb|CF807547.1|CF807547
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
EST: gi|27445929|gb|CA953052.1|CA953052
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
EST: gi|298175277|gb|HO018158.1|HO018158
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
EST: gi|14991023|gb|BI316696.1|BI316696
EST:     GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA
genomic: GTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGgtaagataat ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatggaggagaggataacattttaacttgaatttattttgatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG
               ataacattttaacttg  TA-rich tract