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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactcattttaatttatttacttttgtcaaaagtttctatttaaattgtctcgtatttgtgctatttcttattctattagctttgctgatgaattgcttattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC

Basic information

species Glycine max
transcript GLYMA15G05080.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os03g45770.1 (Oryza sativa), 3'ss of exon 10
gtaagcactcattttaatttatttacttttgtcaaaagtttctatttaaattgtctcgtatttgtgctatttcttattctattagctttgctgatgaattgcttattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC
||| |   |  ||||   ||| | |  |         ||  || |||| || || || || |      |||||| ||          || || ||   ||  || | |||   ||||||| |||||||| || || |||||||| |||||||| |||||||||||| | ||||| ||  | || |||| |||||| ||||||||||| || |||||  
gtatgatattttttttccttaatgagctgaaaattttgtggctgtttagat-gtatc-tactcaacagatttctcat-------atcttactaatttctttgttgt-gatcattgcagATAATGATTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGA

upper sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM5G814310_T01 (Zea mays), 3'ss of exon 1
gtaa--gcactcattttaatttatttacttttgtcaaaagtttctatttaaattgtctcgtatttgtgctatttcttattctattagctttgctgatgaattgct---tattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC
||||  | |   ||| |      |||     | |    ||||| |  | ||| |   |  |   ||    |||    |  ||  ||  || ||| |   |||  |   |  |||| | || ||||||||||||| ||||| |||||||| |||||||| |||||||||||  | ||||| ||  | || |||| |||||| ||||| || || || || ||  
gtaatgggaaatattctttggcgttttggagtatttgtagtttgtgatgaaaatacat--tcgctgcagaattcaccaaacttctatattagctcactcattattttgttctgatctttgtagATTATGATTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGA

upper sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagcactcattttaatttatttacttttgtcaaaagtttctatttaaat-tgtctcgtatttgtgctatt-tcttattctattagctttgctga--tgaattgcttattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC
                                      |   ||  |||   ||  || | ||| | | |   | | |    |||  |||    ||  |||  |   ||||      |||||||||||||||| ||| |||| || || ||||||||||| || ||||||||| | || || |||||  |  ||||||||||| | || ||| | || || |
-----------------------------------gtatgcatacataaccctggttcttttttattccaagatttcagaggattctcttaagcgacatgatataactatttgaaattgcagATTATGATTGGGATTTTGTTCTTCCTGTTTGAGTTTTACGACGATCAGCTATTGGCTTTTATGGTTCTAGTTCTTGTCTGGCTTTGCGAATTATTCACCC

upper sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 10
gtaagcactcattttaatttatttacttttgtcaaaagtttctatttaaattgtctcgtatttgtgctatttcttatt-ctattagctttg-ctgatgaa-ttgcttattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC
               ||||  | | | ||| |     |||| | |||   || ||     | | |  |||     ||   ||| |   |||  |||| || |||  | |||  |||||||||| |||||||| ||  | |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||||||||||| || || ||||| |
-------------cgaattgttgtgcctttct-----gttttttttttgtttctcct---tgtatattatcctccatgattatcactgttgattgataaaattgtgtgttgcattctgcagATAATGATTGGTATCTTATTTTTTCTCTTTGAATTTTATGATGATCAACTATTGGCATTCATGGTCTTAATTCTTGTCTGGTTGTGCGAGCTATTTACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617765|gb|DB959377.1|DB959377
EST:     CATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCT                         ATTATGATTGGCATTCTGT
genomic: CATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTgtaagcactc ... atttctgcagATTATGATTGGCATTCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctatttcttattctattagctttgctgatgaattgcttattgatttctgcagATTATGATTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTC
                                        tattgat  putative branch site (score: 3)
                                              tttctgc  CT-rich tract
     atttcttattctatta  TA-rich tract