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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaatactttaattttggtgactggctatgttttctatttatgtcttatccctaattttatattgattcctacccttctcacataatggtccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTG

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231271|gb|BE800168.1|BE800168
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGG
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGG-A-CCATTGACAGTCCA
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCA
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     AATAT-GATGATGGGCGTGTTGTCAGCA-CTTCATTGCTCAAGCACTGCG                         GGGG-AAC-ATTGACAGTCCA
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCA
EST: gi|19453064|gb|BM954474.1|BM954474
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCCGAAGTTT
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTC-GAAGTTT
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGG-A-CACAAACTCGAAGTTTCTG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatccctaattttatattgattcctacccttctcacataatggtccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTG
                               ttctcac  putative branch site (score: 2)
        taattttatattgatt  TA-rich tract