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gtaattatttcttgcttgcattaccgctacattctctgaatatgtgcatgaataggagatacacacctgaactaccctgccaattatatgcctttagttgcatactttactgtttacttttgatctgctaaggtattacgttacattacgtgtagtttgccaactgggtcatgtaatttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAGTTGTTTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTCCTCTCTTTT
species | Glycine max |
transcript | GLYMA15G04060.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAG AGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAEST: gi|15285753|gb|BI469644.1|BI469644
genomic: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattattt ... tttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
EST: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAG AGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAEST: gi|51342981|gb|CO983714.1|CO983714
genomic: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattattt ... tttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
EST: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAG AGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAEST: gi|15203809|gb|BI426577.1|BI426577
genomic: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattattt ... tttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
EST: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAG AGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAEST: gi|51335348|gb|CO979214.1|CO979214
genomic: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattattt ... tttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
EST: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAG AGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
genomic: CTATGGGAAGCATATTGTTGCTCGTGTAGAGAAACTTGTTGCTGCTGGAGgtaattattt ... tttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAA
ggtattacgttacattacgtgtagtttgccaactgggtcatgtaatttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAGTTGTTTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTCCTCTCTTTT
atgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatttcttgcttgcattaccgctacattctctgaatatgtgcatgaataggagatacacacctgaactaccctgccaattatatgcctttagttgcatactttactgtttacttttgatctgctaaggtattacgttacattacgtgtagtttgccaactgggtcatgtaatttgttgcagAGAGGAGAATTGCTGCTCAGTCTCCTCATCCTGCTTAGGTGGGCATAGAAAGTTGTTTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTCCTCTCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC