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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttcattttcaaattggaaaggatatattggtgttgtatcttcccaactccctaagcaaggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG

Basic information

species Glycine max
transcript GLYMA15G03930.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03930.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 3'ss of exon 10
gtaattgttcattttcaaattggaa--aggatatattggtgttgtatcttcccaactccctaagcaaggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG
     | | |  | |  | |    |  |  | | |   |   | || || |  || ||    | ||  |    | |  |  | ||| |    ||| || |||| || |||||||||||||| ||||||||  | || ||| | || |||||||||||||| ||||||||||| |||||||||||||||||||| || |  ||||||
----gtatcccctcttgactgtagaccaaaaaacacaagatctctacct-cttaattct---atcattgtccttgaattcatgacaat----ttctttgtttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402686|gb|BE058320.1|BE058320
EST:     CTCATTCAAATTGGGATCCCG                         TTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGT
genomic: CTCATTCAAATTGGGATCCCGgtaattgttc ... ttcttaccagTTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctaagcaaggagacttacatagttacattcatgttcattctttcttaccagTTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG
               gacttac  putative branch site (score: 2)
                                     ttcattctttcttacc  putative PPT
                  ttacata  TA-rich tract