1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...attatgaagtgccgaagctttctgttagtactattcagtgcttctcaatggcagctatcacctacattcgtctaatcttagcttggcaattttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGCTCTTATGCCCCTTCATCTCATACTTCATCAAA
species | Glycine max |
transcript | GLYMA15G03190.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGG ATTCACAGGGACCACTCCGCATGAATAAGGATGGCTCTGATAAAGGGGTATEST: gi|24205779|gb|BU965032.1|BU965032
genomic: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGgtctgtaaaa ... tttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAAAGGGGTAT
EST: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGG ATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATEST: gi|163920451|gb|EH038856.1|EH038856
genomic: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGgtctgtaaaa ... tttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGAT
EST: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGG ATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAGAGGGGTAT
genomic: CAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGgtctgtaaaa ... tttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAAAGGGGTAT
caatggcagctatcacctacattcgtctaatcttagcttggcaattttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGCTCTTATGCCCCTTCATCTCATACTTCATCAAA
aattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatgaagtgccgaagctttctgttagtactattcagtgcttctcaatggcagctatcacctacattcgtctaatcttagcttggcaattttgatgcagATTCACAGGGACCACTCTACATGAATAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGCTCTTATGCCCCTTCATCTCATACTTCATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC