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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtttttaaattcttcaagtttaatatattaatctaagtaatatttactttcagaactcagctatacaaatcatttatttatgagtttttctgttaaaacagGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATAGTGGGGATGATGTTCAACAGCATCTGGAG

Basic information

species Glycine max
transcript GLYMA15G00880.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 10
gtgagagtttttaaattcttcaagtttaatatattaatctaagtaatat--ttactttcagaactcagctatacaaatcatttatttatgagtttttctgttaaaacagGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATAGTGGGGATGATGTTCAACAGCATCTGGAG
  |   | |||  |||  |   ||    ||  || ||| || | | |||  ||  ||| ||     |  |  |  | |  || || | |   |||   |   ||| |||||||||| ||||| |||||||| || || ||||| ||||| ||| |||| |||||||| |  ||||||||||||
--gtatgctttagaatgtt---ag---gatgcatcaatataggcattatgattttttttaggctcaaagtggaggagtatttaatgtgtccttttccttcaaaaaccagGAGTTGCATACTCTAGGCACATTGTGCAAATATATTCTTATCATGGTGGTGATGATGTACGGCAGCATCTGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcagaactcagctatacaaatcatttatttatgagtttttctgttaaaacagGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATAGTGGGGATGATGTTCAACAGCATCTGGAG
                                      tttttctgtt  CT-rich tract
               tatacaaatcatttat  TA-rich tract