1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attctgcggtggttcacttacataatggttattttgaagaatgagtaatctttttctgtttctagattttgtattccccatgaattctttcttctttcagGGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTG
species | Glycine max |
transcript | GLYMA15G00590.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTCAAAGTTCTACTATTACAGGAACCTACGCAGGACAGTATGTCATGCAG GGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTEST: gi|7925526|gb|AW831552.1|AW831552
genomic: GTCAAAGTTCTACTATTACAGGAACCTACGCAGGACAGTATGTCATGCAGgtagtttgtt ... cttctttcagGGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGT
EST: GTCAAAGTTCTACTATTACAGGAACCTACGCAGGACAGTATGTCATGCAG GGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGT
genomic: GTCAAAGTTCTACTATTACAGGAACCTACGCAGGACAGTATGTCATGCAGgtagtttgtt ... cttctttcagGGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGT
taatctttttctgtttctagattttgtattccccatgaattctttcttctttcagGGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTG
ttctttcttctttc CT-rich tract
attttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctgcggtggttcacttacataatggttattttgaagaatgagtaatctttttctgtttctagattttgtattccccatgaattctttcttctttcagGGATTTCTGGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
attctgc
- - - -ggtggtt
- - - - - - - cacttac
- - - - - - - - - - - - - - - - - - - gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattc