1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ccttggattttatcaatttgatacatgaacatattagtatccattggtaatccattttaattattactaattactaacacccttttttgttgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCCAAG
species | Glycine max |
transcript | GLYMA14G40570.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|193466002|gb|FK429757.1|FK429757
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|193664006|gb|FK608698.1|FK608698
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|15286391|gb|BI470282.1|BI470282
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|23733371|gb|BU764882.1|BU764882
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|308222649|gb|HO760564.1|HO760564
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|209702339|gb|BW656312.1|BW656312
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: AACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCEST: gi|7684899|gb|AW755547.1|AW755547
genomic: AACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGC
EST: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAG ATTTCTCGCAGAGTATAG
genomic: GGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGgtagttatag ... tgccatctagATTTCTCGCAGAGTATAG
ggtaatccattttaattattactaattactaacacccttttttgttgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCCAAG
tactaac putative branch site (score: 0)
cccttttttgttgcc CT-rich tract
attttaattattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttggattttatcaatttgatacatgaacatattagtatccattggtaatccattttaattattactaattactaacacccttttttgttgccatctagATTTCTCGCAGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
ccttgga
- - - - - - - - - - - -catgaac