1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggcattgttgtgctttgttattgcagataaatatattttatgaggatcataataatttttgctaacaaatgtttcttttgacgttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTCAACAACATAGTAGTCTGAAGACAATCAAGAAGAAACTTATTAGGAAAG
species | Glycine max |
transcript | GLYMA14G40320.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|57574607|gb|CX547582.1|CX547582
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|208064687|gb|GD865067.1|GD865067
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|8283891|gb|BE021450.1|BE021450
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTNTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|15661681|gb|BI699052.1|BI699052
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|192301679|gb|FG997621.1|FG997621
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|192313365|gb|FK005137.1|FK005137
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|58019806|gb|CX706548.1|CX706548
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|208331878|gb|GE130701.1|GE130701
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCTAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTEST: gi|192313364|gb|FK005136.1|FK005136
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|192309871|gb|FK001415.1|FK001415
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|208262509|gb|GE059268.1|GE059268
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|23059035|gb|BU578351.1|BU578351
genomic: TGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGATTTTATTGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|7233546|gb|AW568951.1|AW568951
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTEST: gi|213592217|gb|DB965980.1|DB965980
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
EST: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTG GGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
genomic: TTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgtaggcattg ... ttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTT
tatgaggatcataataatttttgctaacaaatgtttcttttgacgttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTCAACAACATAGTAGTCTGAAGACAATCAAGAAGAAACTTATTAGGAAAG
ataataatttttgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcattgttgtgctttgttattgcagataaatatattttatgaggatcataataatttttgctaacaaatgtttcttttgacgttgggaacagGGTCTTGTTGATTCTGACACTTTGCCACTTAATGTATCACGAGAAATGCTTCAACAACATAGTAGTCTGAAGACAATCAAGAAGAAACTTATTAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA