1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaacacgataattttctactgggtgttttgcttataatcaatgctttttattttaatttgtaactgtgggagcaacaaatttttcttttcttttgagcagAAAGTTTTGCAGAGGACTCCTATAAGGGTGCTACATCGTCGCAGTCCTTTAGAGCGGGAAAAGATTATTCATTG
species | Glycine max |
transcript | GLYMA14G39890.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTCCTCTAAAGGATGAAGATATTCAATGTGTTTCTTCACTCAAGGATTTG AAAGTTTTGCAGAGGACTCCTATAAGGGTGCTAEST: gi|14259851|gb|BG882759.1|BG882759
genomic: GTCCTCTAAAGGATGAAGATATTCAATGTGTTTCTTCACTCAAGGATTTGgtgagctttt ... ttttgagcagAAAGTTTTGCAGAGGACTCCTATAAGGGTGCTA
EST: GTCCTCTAAAGGATGAAGATATTCAATGTGTTTCTTCACTCAAGGATTTG AAAGTTTTGCAGAGGACTCCTATAAGGGTGCTACATCGTCGCAGTCCTTTAEST: gi|208221094|gb|GE020764.1|GE020764
genomic: GTCCTCTAAAGGATGAAGATATTCAATGTGTTTCTTCACTCAAGGATTTGgtgagctttt ... ttttgagcagAAAGTTTTGCAGAGGACTCCTATAAGGGTGCTACATCGTCGCAGTCCTTTA
EST: ACTCAAGGATTTG TEST: gi|208221094|gb|GE020764.1|GE020764
genomic: ACTCAAGGATTTGgtgagctttt ... ttttgagcag-
EST: ACTCAAGGATTTG T
genomic: ACTCAAGGATTTGgtgagctttt ... ttttgagcag-
ttttattttaatttgtaactgtgggagcaacaaatttttcttttcttttgagcagAAAGTTTTGCAGAGGACTCCTATAAGGGTGCTACATCGTCGCAGTCCTTTAGAGCGGGAAAAGATTATTCATTG
ttgtaac putative branch site (score: 2)
tttttcttttctttt putative PPT
aacaaatttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacacgataattttctactgggtgttttgcttataatcaatgctttttattttaatttgtaactgtgggagcaacaaatttttcttttcttttgagcagAAAGTTTTGCAGAGGACTCCTATAAGGGTGCTACATCGTCGCAGTCCTTTAGAGCGGGAAAAGATTATTCATTG
- - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - tgcttat
- - - - - - - - - - - - - - - - - - - caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggag