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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcaaatagccttacacacacgttaatgagaacaaaatagtaccctaaaatgaaatctgaattttgaaagttgatgtttgcagCAAAGATAGACCTGGACAATATGAAAGCCATGCTGCATTTACCCTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAACGTGTTTGATCCGAAGTTCAAC

Basic information

species Glycine max
transcript GLYMA14G39070.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39070.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------------------------------------------------------------------------gtttgctcaaa--tagccttacacacacgttaatgagaacaaaatagtaccctaaaatgaaat--ctgaattttgaaagtt--------gatgtt--tgcagCAAAGATAGACCTGGACAATATGAAAGCCATGCTGCATTTACCCTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAACGTGTTTGATCCGAAGTTCAAC
                                                                                         ||| |||| |    ||  |           | ||   ||     |   ||| ||  || | ||  | || | |||| | ||         |||||  ||||||||||||||||||||||| |||||||||||  || ||||||| || |||||||||||||| ||||||||||| || ||  | |||||||| || ||||||
gtcagaatactaaccaaatttatctgatgcccatacattactgcttataaacattgaaaaggctggtcaactggcagacatttggctatgttggctcgatatcagagtgttggttctccttatctcaaagggttcccaccttactataagataacagactattgacaatttcactgctaatgttgttgcagCAAAGATAGACCTGGACAGTATGAAAGCCACACTTCATTTACTCTTCCAGGGCTGTGTAGAGTTGTTTCAGGCATCAATCTCTTTGATCCCAAATTCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacaaaatagtaccctaaaatgaaatctgaattttgaaagttgatgtttgcagCAAAGATAGACCTGGACAATATGAAAGCCATGCTGCATTTACCCTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAACGTGTTTGATCCGAAGTTCAAC
                 taaaatgaaat  TA-rich tract