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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 11
gtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT
                                                               |||||  ||| ||   || ||||     | |||  ||| | || |    | | | |   ||| |  || |  ||| | ||   ||  | |     |    | |||||||| ||||| ||||||||||| || || ||||| || ||||||||||| ||  || ||||  |||| || |||||| |||| |||||  | ||  | |
--------------------------------------------------------------attttcatttactttcctg-tgttggg--actgta-caactaatcttaatgctta-tgctcttctgcttgacttagctttttcgtttctgtgctt-taaaatgcagAGTGTTCCTGTTCAAGCTGGGCAAACGCCTCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGGGGGAAGCTCAATGCTTACGAGTCTCTTGAGCTAT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 11
gtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT
                                                               |||||  ||| ||   || ||||     | |||  ||| | || |    | | | |   ||| |  || |  ||| | ||   ||  | |     ||   | |||||||| ||||| ||||||||||| || || ||||| || ||||||||||| ||  || ||||  |||| || |||||| |||| |||||  | ||  | |
--------------------------------------------------------------attttcatttactttcctg-tgttggg--actgta-caactaatcttaatgctta-tgctcttctgcttgacttagctttttcgtttctgtgctt-ttaaatgcagAGTGTTCCTGTTCAAGCTGGGCAAACGCCTCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGGGGGAAGCTCAATGCTTACGAGTCTCTTGAGCTAT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 9
gtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatc--tagttcttgatttcttttatcaattt--ttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT
                                                                     | |  |     | |   | | ||||    |||||   |   | ||  ||  | |||| |||   |   || |||||   ||  ||  |  ||     || |||||||| ||||||||||||||||| ||||| ||||| || ||||||||||| ||  || ||||  | || || |||||| | | ||||||  | ||  | |
---------------------------------------------------------------------cctgctatcaggattcatgtacatttaatcaattctca---gtgtataagttcctttctttgacttaataattcttatgtttattactttatcaaaattgcagAGTGTTCCTGTGCAAGCTGGGCAAACACCCCCACTCTTGCAGTACTTTGGCACATTGCTAACTCGAGGGAAGCTCAATGCCTTTGAGTCTCTTGAGCTAT

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 11
gtacactttcgtatctagattttctctgttgtacatgccagtgcttcttgctcctgttaagtgttttctcttagttgtgtggtgtttattcattgtggcaatttatatgggagttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT
                                                             || ||| |   | |||    || |    ||||| |    | |||| |        ||||   |       ||     || |    |  |||| |  ||||||| |||||||| ||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||  || ||| |||||||||
-----------------------------------------------------------gatgctttatgagaattgaagagtttgctatcattttt---acttattta------taataaattgggaaaacacaagattgtcatctgtttttgttcattttttgcagAGTGTCCCTGTGCAATCTGGACAGACACCACCTCTGTTGCAGTACTTTGGTACTCTGTTAACCAGAGGAAAACTCAATGCTTTCGAATCACTGGAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatatgcttttttttcatctagttcttgatttcttttatcaatttttttcagAGTGTACCTGTGCAAGCTGGGCAGACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGT
                          tcttgat  putative branch site (score: 4)
                                tttcttttatcaattt  CT-rich tract
                         ttcttgatttctttta  TA-rich tract