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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttgcatgatccttcaagttatttttatgagaatgatatttggtctttcactttccttgtcttggaatttcttgatagatttgcttgagtttggcagGTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCT

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.2 (Glycine max), 3'ss of exon 10
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtgttgcatgatccttcaagttattttta--tgagaatgatatttggtctttcactttc-cttgtcttggaatttcttgatagat--ttgcttgagtttggcagGTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCT
                       |||| || |       | | || ||| |  ||  | |||  || | ||| |  ||  || | |||   |   ||   | |   || || |||||||||||| ||||||||||  | |||||||||||||| |||||||||||||| ||||| ||| |
-----------------------gttagttctcacctctactaatcttttgctttaaattttggctagcctttgttttcttttaaagaagatcattttcttatcttagATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193723857|gb|FK661793.1|FK661793
EST:     TTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTT                         GTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCT
genomic: TTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACTTTgtatgtgttg ... agtttggcagGTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttcactttccttgtcttggaatttcttgatagatttgcttgagtttggcagGTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCT
                           tcttgat  putative branch site (score: 4)
                       aatttctt  TA-rich tract