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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcaccctattctcaccaagaaccccacaaataatcctcattttaactttatatattatttctctctttccttattgtgaatttaccgtgcacttgtcagGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAG

Basic information

species Glycine max
transcript GLYMA14G10790.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 3'ss of exon 9
gtcaccctattctcaccaagaaccccacaaataatcctcattttaactttatatattatttctctctttccttattgtgaatttaccgtgcacttgtcagGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAG
       ||||     ||| | |    |      |  |  |||   |  | |||    ||   ||| ||  |   |   |  || |     ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| ||  ||||| | || ||||||||||| |||||||| |   | ||||||||||||
------gtattagtttcaatatcttgtc------tttttctttgtcccctctatgcagttcaactcctttttctattaaagcttccaaattacttg-cagGCCAAGGGAATGAATTACTTGCACACAAGCCATCCTACTATTGTACATAGAGATCTGAAATCTCCAAATCTCCTTGTTGATAAAAACTGGGTTGTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193677298|gb|FK620520.1|FK620520
EST:     CAAATCTTCGACTTGATGAGAAGAAACGGTTGCGCATGGCTCTAGATGTG                         GCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGA
genomic: C-AATCTTCGACTTGATGAGAAGAAACGGTTGCGCATGGCTCTAGATGTGgtatgaagtt ... cacttgtcagGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttatatattatttctctctttccttattgtgaatttaccgtgcacttgtcagGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCACCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGGTTGTTAAG
 ttttaac  putative branch site (score: 2)
     atatattatttctct  TA-rich tract