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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttatctattatctagaatcattagtttcaaaaattcatctgccttatggagttggattgcgtaataaattggcaatgaccattagagcctaaccactttttactaactcatatcctgtagATTGGAATTGGACTGCTTATTTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACAATCTTTCGAAGTGCTG

Basic information

species Glycine max
transcript GLYMA14G08070.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08070.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 3'ss of exon 10
-----------------------gtatttcttatctat-tatctagaatcattagtttcaaaaat-tcatctgccttatggagttggattgcgtaataaa--ttggcaatgacc---attagagcctaaccactttttactaactcatatcctgtagATTGGAATTGGACTGCTTATTTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACAATCTTTCGAAGTGCTG
                        ||  | | ||  ||  ||   |     | ||| |  ||| | | |  || | |     | |   ||| |   | |   |||||| ||      || | |  || |    |||||||    ||||||||||||| | ||||||||  | |||||| ||||||||||   |||||| ||||||||||| || ||||||| ||| || |||  |  |||||
gtactaattattgtttggaagttctaggtttcattcatgcatggtgtggtttgagtcttgaaagtattagatgtcatgatctgattatttgtggtctcagccttggcagtgttatgaatcacaatcttattgttttttacc--ttcatatcctgtagGTGGGAATTGGGTTACTTATTCTGCAACAGCTCAGTGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattggcaatgaccattagagcctaaccactttttactaactcatatcctgtagATTGGAATTGGACTGCTTATTTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACAATCTTTCGAAGTGCTG
                                   tactaac  putative branch site (score: 0)
                               tttttactaa  TA-rich tract