Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtcaacttccagcttagccctccctttctgtttaggtcggggtaaaatggtgaagagggtaaccttttagctagaacttatggtttatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG

Basic information

species Glycine max
transcript GLYMA14G04030.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04030.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
gtaagatgtc--aacttccagcttagccctcc----ctttctgtttaggtcgg---ggtaaaatggtgaagagggtaaccttttagctagaacttatggtttatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG
||||| || |   | ||   | |     || |    ||    | | |  | ||   | |||| |    ||   |      ||||  ||    || |   | ||| |||||  ||||| ||||||||||| || |||||||| |||||| |||||||||||||||||||
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773716|gb|BG238643.1|BG238643
EST:     GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG                         GAAATCT-GCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGA
genomic: GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTGgtaagatgtc ... tatctcacagG-AATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGA
EST: gi|8826144|gb|BE209804.1|BE209804
EST:     GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAA
genomic: GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTGgtaagatgtc ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAA
EST: gi|14989991|gb|BI315664.1|BI315664
EST:     GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG                         GAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAA
genomic: GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTGgtaagatgtc ... tatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatggtgaagagggtaaccttttagctagaacttatggtttatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG
            gggtaac  putative branch site (score: 3)
                                 ttatggtttatatat  TA-rich tract