1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagggttttaaatgcatttaattggcagcagatttgaatgttcagtttcaaaacctaccacaagtaggaaattgaaagaataagtttttcacattcaggaaatttgatttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAG
species | Glycine max |
transcript | GLYMA14G03040.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACA GTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGEST: gi|9902790|gb|BE611758.1|BE611758
genomic: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACAgtaagggttt ... ttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAG
EST: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACA GTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGEST: gi|21600290|gb|BQ610621.1|BQ610621
genomic: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACAgtaagggttt ... ttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAG
EST: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACA GTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAG
genomic: CGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACAgtaagggttt ... ttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAG
gtaggaaattgaaagaataagtttttcacattcaggaaatttgatttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAG
atttgat putative branch site (score: 5)
tttgtcc CT-rich tract
aaattgaaagaataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggttttaaatgcatttaattggcagcagatttgaatgttcagtttcaaaacctaccacaagtaggaaattgaaagaataagtttttcacattcaggaaatttgatttgtccatagGTTAATTGAGGAATGCTGGGATGAAAAACCATACAGAAGGCCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATATACTACCATCTTGCTCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA