1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgatttctttttttcttgcctttcacctcctttgtatttagatgaaattgtttaaggattagttgggtatatttttcatttgcactttgtattggatgagattgctggagataaaagactactaaattgtctcccagtatataatattttgagatttaccatgtcattaatgcattccattgcattcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGGAGTACAGTGAAGTAATTATTAAGAAGGGACCTCATGTGCTGGTTGATG
species | Glycine max |
transcript | GLYMA14G02260.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCCCTTGCGTGTG CCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGEST: gi|6915855|gb|AW397385.1|AW397385
genomic: CTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
EST: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTG CCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGEST: gi|18690719|gb|BM519567.1|BM519567
genomic: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
EST: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTG CCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGEST: gi|208339958|gb|GE134022.1|GE134022
genomic: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
EST: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTG CCTCCTTTGAAGTTAAAEST: gi|193433811|gb|FK403211.1|FK403211
genomic: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAA
EST: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTG CCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGEST: gi|193324466|gb|FK289638.1|FK289638
genomic: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
EST: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTG CCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
genomic: AATTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGCGTGTGgtatgatttc ... tcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAG
ataatattttgagatttaccatgtcattaatgcattccattgcattcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGGAGTACAGTGAAGTAATTATTAAGAAGGGACCTCATGTGCTGGTTGATG
cattaat putative branch site (score: 3)
tcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatttctttttttcttgcctttcacctcctttgtatttagatgaaattgtttaaggattagttgggtatatttttcatttgcactttgtattggatgagattgctggagataaaagactactaaattgtctcccagtatataatattttgagatttaccatgtcattaatgcattccattgcattcatatgcagCCTCCTTTGAAGTTAAATCTACTTCCCAGAGAATCAAGAATCAGCAGCAAGGAGTACAGTGAAGTAATTATTAAGAAGGGACCTCATGTGCTGGTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG