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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggattacatgtcaaagtttcaattgtagtcatttttcaactcatgatgcggtgaattttaattcttcatattgctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG

Basic information

species Glycine max
transcript GLYMA14G00760.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00760.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 11
gtaggattacatgtcaaagttt------caattgtag--tcattt-ttcaactcatgatgcggtgaattttaattcttcatattgctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
||| | ||  |||      | |      ||||   |   |||||| |||||   ||||       ||| ||| ||  ||| ||||   |||| ||||||||||||| |||||||||||||| ||||||||||   | 
gtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcac-aatcttattttgtcacattgg-atctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848225|gb|BF070769.1|BF070769
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|192329989|gb|FK021575.1|FK021575
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|17021784|gb|BM092818.1|BM092818
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|15812294|gb|BI784569.1|BI784569
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|31472565|gb|CD414593.1|CD414593
EST:     TGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: TGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|151406879|gb|EV276694.1|EV276694
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|298184901|gb|HO030114.1|HO030114
EST:     GGTTGGAGACTTCACAAATTGATTTTCATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|192313001|gb|FK003653.1|FK003653
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|31472065|gb|CD414093.1|CD414093
EST:     GTTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTCCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|208170990|gb|GD970183.1|GD970183
EST:     GGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|192328380|gb|FK020091.1|FK020091
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|15203843|gb|BI426611.1|BI426611
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|209708680|gb|BW678861.1|BW678861
EST:     GGTTGGAGACTTCGCAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|10256517|gb|BE824283.1|BE824283
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
EST: gi|37994372|gb|CF806118.1|CF806118
EST:     GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCG                         GTTGTGGCTCTCGCAAATCAGAA-CTTCTTGGACTTAACTCG
genomic: GGTTGGAGACTTCACAAATTGATTTTTATGAAATTAATGAAGCCTTTGCGgtaggattac ... ctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttttcaactcatgatgcggtgaattttaattcttcatattgctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
                           ttttaat  putative branch site (score: 3)
                       tgaattttaattcttc  TA-rich tract