1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccattatacatgagatcagagaagattagcatccaaatctttttaacttttttcataaagctcagttttaataacatatatatttgtgatggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG
species | Glycine max |
transcript | GLYMA13G44940.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATEST: gi|209727642|gb|BW652015.1|BW652015
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAAT
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGEST: gi|51342164|gb|CO983425.1|CO983425
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGEST: gi|13789259|gb|BG651850.1|BG651850
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGGAGGGTGTTGAAAATTTTGGAAACAAACTTCTCAEST: gi|214009438|gb|DB988621.1|DB988621
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGG-AGG-TGTTGAAAATTTTGGAAACAAACTTCTCA
EST: A-GGATCTGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATTTTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGEST: gi|21594248|gb|BQ610100.1|BQ610100
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGEST: gi|7639905|gb|AW734217.1|AW734217
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGEST: gi|7795496|gb|AW780893.1|AW780893
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
EST: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAG TGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
genomic: ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGgtaagtttac ... tggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAG
aacttttttcataaagctcagttttaataacatatatatttgtgatggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG
taataac putative branch site (score: 1)
agttttaataacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccattatacatgagatcagagaagattagcatccaaatctttttaacttttttcataaagctcagttttaataacatatatatttgtgatggattttagTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - acatgag
- - - - - - - - - - - - - - -gcatcca