1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttattacacgacatggaattagtagtttgttatcttcactaaataatgtattctcagagaaattttttatttagaaatgtaacctttttcttttattagTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGG
species | Glycine max |
transcript | GLYMA13G44910.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGG TGATATATTTGATCAACCTEST: gi|6666944|gb|AW278403.1|AW278403
genomic: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGgtgagtgtac ... cttttattagTGATATATTTGATCAACCT
EST: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGG TGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACEST: gi|193717428|gb|FK650292.1|FK650292
genomic: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGgtgagtgtac ... cttttattagTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGAC
EST: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGG TGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGAC
genomic: CATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGgtgagtgtac ... cttttattagTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGAC
aatgtattctcagagaaattttttatttagaaatgtaacctttttcttttattagTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGG
atgtaac putative branch site (score: 3)
cctttttcttttatt CT-rich tract
aaattttttatttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattacacgacatggaattagtagtttgttatcttcactaaataatgtattctcagagaaattttttatttagaaatgtaacctttttcttttattagTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - ttacacg
- - - - - - catggaa
- - - - - - - - - - - - - - - - -tcttcac
- - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaacc