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...taattcaaattctgtttctctacaattgtattgttgtttgtttacttgtttgctccttccttcgtttcctttatttctctgattctaatatggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGATTGATAGGAAAACTCATACTTTTATGCTGCAAAGTGTGCCTAATGCTT
species | Glycine max |
transcript | GLYMA13G42890.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAG GGGATTACAAGCTTAATACAAGATGCAAEST: gi|120494560|gb|EH222727.1|EH222727
genomic: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAGgtcaggcact ... tggctttcagGGGATTACAAGCTTAATACAAGATGCAA
EST: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAG GGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGEST: gi|193691930|gb|FK631013.1|FK631013
genomic: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAGgtcaggcact ... tggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTG
EST: AATCTGTGATCAATTAAAACGTTCCATTTCAAG GGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGEST: gi|51338314|gb|CO982180.1|CO982180
genomic: AATCTGTGATCAATTAAAACGTTCCATTTCAAGgtcaggcact ... tggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTG
EST: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAG GGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTG
genomic: CCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAGgtcaggcact ... tggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTG
ttgtttgctccttccttcgtttcctttatttctctgattctaatatggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGATTGATAGGAAAACTCATACTTTTATGCTGCAAAGTGTGCCTAATGCTT
ttctaat putative branch site (score: 2)
ctttc putative PPT
attctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattcaaattctgtttctctacaattgtattgttgtttgtttacttgtttgctccttccttcgtttcctttatttctctgattctaatatggctttcagGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGATTGATAGGAAAACTCATACTTTTATGCTGCAAAGTGTGCCTAATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - -ttctgtt
- - - - - - - - -ctctaca
- - - - - - - - - - - - - - - - - tgtttgt