1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aattttcttttgcttcatattcctattttgttagttgtgaaatgattgcattattagatagtaataatggtgtactttcatattttctcaataactgtagGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCATGGGGGTGTCGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTG
species | Glycine max |
transcript | GLYMA13G41520.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATTCCTAATAAGTTTGGTATATCCTTTACGACAAAGCTTATGAACCAG GCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCATEST: gi|33389941|gb|CA853148.1|CA853148
genomic: TGATTCCTAATAAGTTTGGTATATCCTTTACGACAAAGCTTATGAACCAGgtaaaatctg ... ataactgtagGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCAT
EST: TGATTCCTAATAAGTTTGGTATATCCTTTACGACAAAGCTTATGAACCAG GCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCAT
genomic: TGATTCCTAATAAGTTTGGTATATCCTTTACGACAAAGCTTATGAACCAGgtaaaatctg ... ataactgtagGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCAT
ttgcattattagatagtaataatggtgtactttcatattttctcaataactgtagGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCATGGGGGTGTCGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTG
caataac putative branch site (score: 2)
ttattagatagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttcttttgcttcatattcctattttgttagttgtgaaatgattgcattattagatagtaataatggtgtactttcatattttctcaataactgtagGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCATGGGGGTGTCGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTG
- - - - - tgcttca
- - - - - - - - - - - - - - - - agttgtg
- - - - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggtg