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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatccattttcaaattggaaaggatattggtattctatctttccaaccccatagcagggtgacttacatagttacattcatgttcatccttttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG

Basic information

species Glycine max
transcript GLYMA13G41460.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41460.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 3'ss of exon 10
gtaattatccattttcaaattggaaaggatattggtattctatctttccaaccccatagcagggtgacttacatagttacattcatgttcatccttttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG
|||      | |      |    |||  | |   |   |||| || |  ||  | ||  ||  ||   | |  |  | ||| |    ||| |  |||  || |||||| ||||||| ||||||||  | || ||| | || ||||| |||||||| ||||||||||| |||||||||||||||||||| || |  ||||||
gtatcccctcttgactgtagaccaaaaaacacaagatctctacctctt-aattctat--cattgtccttgaattcatgacaat----ttctttgtttcatatcagTTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341966|gb|CO983283.1|CO983283
EST:     TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCG                         TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT
genomic: TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCGgtaattatcc ... tttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT
EST: gi|192298304|gb|FG992094.1|FG992094
EST:     TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCG                         TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT
genomic: TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCGgtaattatcc ... tttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT
EST: gi|16106302|gb|BI894042.1|BI894042
EST:     TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCG                         TTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT
genomic: TATTTACACAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATCCCGgtaattatcc ... tttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accccatagcagggtgacttacatagttacattcatgttcatccttttttaccagTTTATTGCAGTCACTCAACCCCTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG
               gacttac  putative branch site (score: 2)
                                     ttcatccttttttacc  putative PPT
                                            tttttta  TA-rich tract