1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctcaaggtcttttgcctcccaactttttctctcctttatttatgcttcatgttattattccctaccaagttcaggcctaacaaatcttgtttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCCT
species | Glycine max |
transcript | GLYMA13G36670.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|18725624|gb|BM523623.1|BM523623
genomic: GAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAGgtaatttaat ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: GAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGAEST: gi|6071950|gb|AW101337.1|AW101337
genomic: GAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAGgtaatttaat ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGA
EST: AGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTTCTCCTCCAGG GTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAG
genomic: AGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGG-TTTCTCCTCCA-Ggtaatttaat ... ttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAG
ttcatgttattattccctaccaagttcaggcctaacaaatcttgtttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCCT
gcctaac putative branch site (score: 2)
tcttgttt putative PPT
taacaaatcttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaaggtcttttgcctcccaactttttctctcctttatttatgcttcatgttattattccctaccaagttcaggcctaacaaatcttgtttatttatagGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCCT
- - - - - - - cctccca
- - - - - - - - - - - - - - ctctcct
- - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaaca