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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAG

Basic information

species Glycine max
transcript GLYMA13G32940.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32940.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 11
gtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaat-tctaccctaaaacatgttta-tccatttattttcgtgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAG
||| ||||| |     |  | |||          |   |   ||   || |||| ||| ||  ||    | |  ||   || || ||||| ||  | |  | || | | ||| | |      ||| |||| | ||| | ||  ||| | |           | |  ||||||||| |||||||| |||||| ||||||||||| | ||| | || |||||||||||||| ||||| || || ||||||||||| ||| |||||
gtatgtcttatagggctcttgttttttcttcctaagttctctgag--taaattttgaatttatttc---taaacttca-aattgttttgccattattta-gcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcagGTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339195|gb|GR847912.1|GR847912
EST:     CTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAA                         GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCA
genomic: CTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtcttt ... gtgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAG
                ccctaaa  putative branch site (score: 3)
                                        ttttcgt  putative PPT
                            tttatccatttatttt  TA-rich tract