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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaagagtctttttttgttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG

Basic information

species Glycine max
transcript GLYMA13G30060.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 10
gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaag----agtctttttttgtt---atgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG
                                                           ||| ||| |    | |||||| ||   ||| |       || || |      |||| || |  |   ||    || ||| |||      ||  |||  ||| |   ||||||||||| |||||||||||| | ||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||| | || ||||||||||| |
----------------------------------------------------------aattgtttaa----agcttatgctttagctgga-------aaacagtataatctctaaagcagcat--gctggacattttcaaagagcttagcatttggttgattatatgcagCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATG

upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 3'ss of exon 10
gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaagagtctttttttgttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG
                                            |   ||||||    | |||||     | |    |  |  |   |||    || | |  | ||| | || |   ||  | ||    ||    |||||| |          |  ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||| ||||||| || ||||||||||| ||  |||| |||||||| || |
-------------------------------------------tcatgtttagt----cgttattcagtgtaattgcaatagccagatga---caacttaatattgattttttttccgatgtgcttattca----tttgaata----------tctttatgcagCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACG

upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 10
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 3'ss of exon 9
gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaagagtctttttttgttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG
                                                                      | | | | || |  |      |||  | | ||  | ||  | | |  |||    ||  | |  | ||||         |||  | ||  | ||||| ||||| ||||||||||| ||||||||||||||  ||||||| || |||||  | |||||||| || || || || ||| | || |||||||| || |
---------------------------------------------------------------------gtaagcat-tggtcttg--aggtttcttcagtctctaagaatccaactgaatccttactata-tattttg---------tttcctcgtatttcagCTCGAAGCTTGTGCACATCCGTTCTTTGATGAACTCAGAGAACCAAACGCTCGTTTACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAG

upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaagagtctttttttgttat-gcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG
                                                        ||  || ||| | ||| |    | ||| |    | |   |||    |||     || |     | | | | |    |  |||||  |   | | ||||||| || |||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | || || || |||||||
--------------------------------------------------------tagtttctttaa-atc-ctaagtaattattagtagtactattttgaaatatacattgtcc---atttccatc----ctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctatagaaatactagcacagcaatttgaaaagagtctttttttgttatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG
                                     tctttttttgttat  CT-rich tract
                                     tctttttttgttat  TA-rich tract