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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttattgttccttctttttgtgtttaacaaaaaaaaaaaaaattagtttccctcttttcttcccctaattcatccattatagatgacatgcttttcaatgtaaaaagacatgattttccatgttgatatatgatccttgttagtaccttggctatgcttcatattaattaacaacacatcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG

Basic information

species Glycine max
transcript GLYMA13G29410.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29410.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 3'ss of exon 9
gtaagcttattgttccttctttttgtgtttaacaaaaaaaaaaaaaattagtttccctcttttcttcccctaattcatccattatagatgacatgcttttcaatgtaaaaagacatgattttccatgttgatatatgatccttgttagtaccttggctatgcttcatattaattaacaacacatccttta---gGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG
                                                                                             |  ||  | || | |    |  | |||     ||   || |    || |     |   ||   ||  | || ||| ||||  |     ||||| | |   |||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||| |||||||||||||
---------------------------------------------------------------------------------------------tatttaactatatcagtgaatctcattacaactgcccatttcatttcttctcctgcgactca-ctcagtttaatagtaatccatgtgtcatccatcaacagGGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298535|gb|FG988506.1|FG988506
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254330688|gb|GR841953.1|GR841953
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58014729|gb|CX701471.1|CX701471
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|4437020|gb|AI522885.1|AI522885
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209726322|gb|BW680234.1|BW680234
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209729808|gb|BW658613.1|BW658613
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGGCTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213593328|gb|DB975696.1|DB975696
EST:     TGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGTTTGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|19052654|gb|BM731321.1|BM731321
EST:     TCTAAGGCCATCT                         GGTCTTGATGGTGCTAGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254346600|gb|GR856322.1|GR856322
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209698391|gb|BW667186.1|BW667186
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|15815903|gb|BI788178.1|BI788178
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|214009429|gb|DB990635.1|DB990635
EST:     TTTCTGAACGTAGTGACAAGCATCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|20075616|gb|BQ094399.1|BQ094399
EST:     CCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58018378|gb|CX705120.1|CX705120
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254335575|gb|GR847103.1|GR847103
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254345540|gb|GR851702.1|GR851702
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254333982|gb|GR848900.1|GR848900
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213597480|gb|DB981648.1|DB981648
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|298170634|gb|HO019258.1|HO019258
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|214009268|gb|DB990600.1|DB990600
EST:     TTCTGGTGGTAGTGACAGT-ATCCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTCTGGTGGTAGTGACAATCA-CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|213594872|gb|DB977214.1|DB977214
EST:     TTCTGGTGGTAGTGAC-ATTAGTCTGGTTCTTGTCGATCTAGGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTCTGGTGGTAGTGACAATCA-CCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|9819792|gb|BE555305.1|BE555305
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|192301793|gb|FG994445.1|FG994445
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|7591183|gb|AW706921.1|AW706921
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTT
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTT
EST: gi|58023902|gb|CX710643.1|CX710643
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|18735429|gb|BM528760.1|BM528760
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAA-TTCTTGACTTGGCTTCTATA-CC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|254346462|gb|GR856184.1|GR856184
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209722222|gb|BW662394.1|BW662394
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209725263|gb|BW672738.1|BW672738
EST:     CGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|10254054|gb|BE821820.1|BE821820
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|58014732|gb|CX701474.1|CX701474
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|298186489|gb|HO037122.1|HO037122
EST:     TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: TTTCTGGTGGTAGTGACAATCACCTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
EST: gi|209725542|gb|BW677842.1|BW677842
EST:     CTGGTTCTTGTCGATCTAAGGCCATCT                         GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC
genomic: CTGGTTCTTGTCGATCTAAGGCCATCTgtaagcttat ... catcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatccttgttagtaccttggctatgcttcatattaattaacaacacatcctttagGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG
                                  aattaac  putative branch site (score: 2)
                                             catccttt  putative PPT
                          ttcatattaattaaca  TA-rich tract