Sequence
atgc intronic sequence ATGC exonic sequence...aattcttaaatctcctgcagtagccgattttgtttgtatgattgaccatctttttctaagtgtttaaaaagcttgtatataatatctgttatattagcagGGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAG
Basic information
species | Glycine max |
transcript | GLYMA13G28760.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G18590.1 (Arabidopsis thaliana), 3'ss of exon 12
aattcttaaatctcctgcagtagccgattttgtttgtatgattgacc---atctttttctaa----gtgtttaaaaagcttgtatataatatc-tgttatatt---agcagGGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAG
| || | | | | ||| | | | | | | | || || || || || | | | ||||||| ||| | | || ||| || | |||| ||||| ||| || ||||||||||||||||||| |||||||| || ||||| ||| | |||||||| || |||||||||
-----gtggataaatagaaaaatcacattct-tatatgtaactaacttgtatattctttcaaccccatctgttaaaagctcagttattgtcttgtggtatgtttgaaatagGGATTTAGTCTAGTTCTTCTGCAACACAAGGATAAAGATTTCCTTGTAGCTTTTGGAGGAACGAAAAAAGATCCTTCAAATCAG
upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 12
--aattcttaaatctcctgcagtagccgattttgtttgtatgattgaccatctttttctaagtgtttaaaaagcttgtatataatatctgttatattagcagGGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAG
| | || ||||| ||| | |||| || || | | ||| | | | || ||| |||||| | || ||||| || |||||| || ||||| ||||| || || || ||||||||||||||||||||| ||||||| |||||||||||| ||
cagacacaactggttcagttggtagcatttttcttactgggcattggatatattctcattt-tgtattgttgcttggcatctaaagtctgttgt-ttcccagGGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatctttttctaagtgtttaaaaagcttgtatataatatctgttatattagcagGGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAG
tttaaaaagcttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattcttaaatctcctgcagtagccgattttgtttgtatgattgaccatctttttctaagtgtttaaaaagcttgtatataatatctgttatattagcagGGTTTTAGCCTAACACTCGTGCAACACAAGGATAAAGACTTCCTTGTTGCATTTGGGGGATCCAAAAAAGAGCCATCAAATCAG
- - - - - - tcctgca
- - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgta