Sequence
atgc intronic sequence ATGC exonic sequence...tccttagaaagaagacaaaattttgattttttttcccactaatttttcattaagttaagctgtataagtttcttccctcattcatattgcacatttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
Basic information
species | Glycine max |
transcript | GLYMA13G20750.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G20750.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os06g51460.1 (Oryza sativa), 3'ss of exon 11
---------------------------------------tccttagaaagaagacaaaattttgat-tttttttcccac-taatttttcattaagttaagctgtataagtttcttccctcattcatattgcac-atttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
||| | | || | | || ||| | | || |||| | ||||| ||| ||| || | | | | | |||||||| | || |||||||||| ||| || ||| |||| |||||||| || |||| |||||||||||||| ||||||||||| || |||| | || |
gtaagtttctcagcccatcctggaaaggagtcttttttatccatgaattattttcagagaaataatgtttatataatacgtaatgagaaaataagt-aagtagtaaaaataaggtaataagcgtgggatatattaattgcagCTCTGCTGTGCAAGATTGGAGCGCTGAGATCATTCTCTCTGGAGAAGATACACTACTGGAGGGAGAGAGCATCTGGAATGAGCTCGTTGGCGTACTTCAT
upper sequence: GLYMA13G20750.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G37010.1 (Arabidopsis thaliana), 3'ss of exon 11
---tccttagaaagaagacaaaattttgattttttttcccactaatttttcattaagttaagctgtataagtttcttccctcattcatattgcacatttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
|| | | | ||||| || || ||| | | || | || | | | | |||| | || | || | || |||| |||| | | || ||||| | ||| | ||| |||| ||| | |||||||||||||| ||||| || ||||| |||||||||| ||| |||| |||||| |
gtaagtttcttacgtacacaaatattaatttacatttactagtattcgcgatttttggaacgttaactaagctcttttctgtatgtct-ttctttttttgtagCTCTTTTGTGTAAGATCTCGGCATTGAGATCATTCTCTGTAGATAAATTACAATATTGGAGAGAAAGTGCCGCTGGAATTAGCAGTTTGGCACATTTTAT
upper sequence: GLYMA13G20750.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g01620.t01 (Vitis vinifera), 3'ss of exon 12
tccttagaaagaagacaaaattttgattttttttcccactaatttttcattaagttaagctgtataagtttcttccctcattcat--attgcacatttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
||| || | | |||||| || || | | |||| || || ||||| || || | || ||| | | |||||| | || || |||||||| || | ||| ||||||||||||| |||||||| |||||||| |||||||||||||| || || ||||||||| ||||| |
--attaacaacatggtgcaattttatttaacattactattaatgattttttggcaccgtttgtattttcttgttgttgaaaatatcaattactgacctgcagCACTCCTATGTAAGATTGCGGCTTTGAGATCATTTTCTCTGGACAAATTACACTACTGGAGAGAGAGTGCATCTGGCATGAGCAGTCTGGCTTATTTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcattaagttaagctgtataagtttcttccctcattcatattgcacatttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
tataagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccttagaaagaagacaaaattttgattttttttcccactaatttttcattaagttaagctgtataagtttcttccctcattcatattgcacatttgcagCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - -aagacaaa
- - - - - - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgta