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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttatcatctcctagcaccagttagtacaatggaatatgaacttcacaaccaacaaaaattgacttttaatttctgaaatatttcagGAGGACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGATTAGTTCATTGCTTAAGATACTTAGTTCCTTTTTGATAAGGATCCGTTGG

Basic information

species Glycine max
transcript GLYMA13G19730.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994257|gb|BQ785785.1|BQ785785
EST:     TACATACCCTCGTCAATGACATGTTTCCTCCAACTTCTTTGGTCGAGCAG                         GAGGACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGAT
genomic: TACATACCCTCGTCAATGACATGTTTCCTCCAACTTCTTTGGTCGAGCAGgtgacttatc ... aatatttcagGAGGACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGAT
EST: gi|14009095|gb|BG725699.1|BG725699
EST:     TACATACCCTCGTCAATGACATGTTTCCTCCAACTTCTTTGGTCGAGCAG                         GAGTACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGAT
genomic: TACATACCCTCGTCAATGACATGTTTCCTCCAACTTCTTTGGTCGAGCAGgtgacttatc ... aatatttcagGAGGACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatatgaacttcacaaccaacaaaaattgacttttaatttctgaaatatttcagGAGGACTACAACTCATGGAATTATTGGAAAACACCATTGCCAGATATTGATTAGTTCATTGCTTAAGATACTTAGTTCCTTTTTGATAAGGATCCGTTGG
                                ttttaat  putative branch site (score: 3)
                      aaaaattgacttttaa  TA-rich tract