1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctccttttttttattaattgaaaaaatagggattgaacatgatacctatattatcccgatattatgatagcattaacttttcttgcaattatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATCATGGAAAAAGAATTTTGAAG
species | Glycine max |
transcript | GLYMA13G18730.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|208124724|gb|GD924170.1|GD924170
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGCTGATEST: gi|192329899|gb|FK021485.1|FK021485
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|192296070|gb|FG993418.1|FG993418
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|193713150|gb|FK651517.1|FK651517
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|193665701|gb|FK609630.1|FK609630
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|7233647|gb|AW568919.1|AW568919
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATEST: gi|6913542|gb|AW395072.1|AW395072
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
EST: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAG GTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
genomic: TAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGgttagtttgc ... tatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGAT
cctatattatcccgatattatgatagcattaacttttcttgcaattatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATCATGGAAAAAGAATTTTGAAG
cattaac putative branch site (score: 2)
aattatattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctccttttttttattaattgaaaaaatagggattgaacatgatacctatattatcccgatattatgatagcattaacttttcttgcaattatattcaagGTTGCACTGAAAGTACCCGTAGTAGTTCGTCTGGAAGGCACCAATGTTGATCATGGAAAAAGAATTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
cctcctt
- - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - -gggattg
- - - - - - - - - - - - - - - - - - - - tgatacc