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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcatgtaaattatttcttccatatttttattcttgaagaaaattaatgagacattctcgacattggaggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatagGTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATGTATGAAGTGGTCACAGGCGAGGGCCTTATGCGTCCATGCTTCAAAGCTC

Basic information

species Glycine max
transcript GLYMA13G17950.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 10
gtaagttcatgtaaattatttcttccatatttttattcttgaagaaaattaatgagacattctcgacattggaggaataaaatacactatctccacgtcattatttttccctaaattaacaaccttatcttattatgaaataaactttggataaatggacatggttttgttcatggatagGTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATGTATGAAGTGGTCACAGGCGAGGGCCTTATGCGTCCATGCTTCAAAGCTC
                                                                      ||   ||| | | | | |  ||  ||    |     |  | |    |    || |       || ||   |   |||     |  ||  || |   |||||| ||  ||||| |||||||| || || || |||||||||||||||| |||||| ||  ||||||| ||||| ||||  ||||| || ||||||||||||||||| ||| 
----------------------------------------------------------------------ggctaaattataaagaatgcctaaacaatgtaggagtcacatgtgctttgcacttctggcagttttg---ttgccttc----atgtgttcacg---ttgttcttgtgtagGTTATAGTCTCTGCGAGGAAGCCAGAGTTCTTCCAAATGTCACACCCATTGTATGAGGTGGTGACAGATGAGGGTCTAATGCGTCCATGCTTCAAGGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203420|gb|BI426188.1|BI426188
EST:     GGTTGGCGAGATCTATTTGACATT                         GTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATG
genomic: GGTTGGCGAGATCTATTTGACATTgtaagttcat ... tcatggatagGTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttattatgaaataaactttggataaatggacatggttttgttcatggatagGTAATAGTCTCAGCAAGAAAACCAGAGTTCTTCCAAACGTCACATCCCATGTATGAAGTGGTCACAGGCGAGGGCCTTATGCGTCCATGCTTCAAAGCTC
                                       ttttgttc  CT-rich tract
     tattatgaaataaact  TA-rich tract