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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttctaatttgcacatcttgccttcttcactactctaatttgttcttcctaaactaatggattgagtatactgatacaataaacagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATG

Basic information

species Glycine max
transcript GLYMA13G17930.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17930.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00890.t01 (Vitis vinifera), 3'ss of exon 10
gtaactttctaattt-----gcacatcttgccttc----ttca-ctactctaatttgttcttcctaaactaatggattgagtatac-tgatacaataaa----------cagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATG
|||||||||| ||        |||||| |  |||     |||| || || |  |||||||| | |||  |  |   |||   |||| | | |   | ||          |||||||| || ||||| ||||||||||| ||||| ||||||||||  || ||| | || || |||||||||||||| || |||||||| || || |||||||
gtaactttctcatgacacaaacacatcctttctttcagtttcagcttctattctttgttctgcataa--ttgtaagttgtacatacataacaatctgaatcttacttctcagACAGTTGCTCTGGTCGGAGAAAGTGGGAGTGGTAAATCAACAGCAATCTCACTGTTGCAGAGATTTTATGACCCGGATTCAGGTCATATCACTCTGGATG

upper sequence: GLYMA13G17930.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
------------------gtaactttctaatttgcacatcttgccttcttcactactctaatttgtt-cttcctaaactaatggat-tgagtatactgatacaataaa-cagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATG
                  | |||| | |   |||  | | ||   |||  ||     ||||||     |    || |   ||  || |||| ||    || |  |    |||||||| || |||||||||||||||||  |||||||||| || ||||| |||||| | || ||||||||||| || || |||||||  || ||||||||||
gtaactgtaacacttccagcaactctgtttcttgttc-tattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321098|gb|FK012438.1|FK012438
EST:     CCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGTGGCAAG                         ACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCA
genomic: CCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGTGGCAAGgtaactttct ... caataaacagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctaatttgttcttcctaaactaatggattgagtatactgatacaataaacagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATG
                                     tactgat  putative branch site (score: 2)
                                          atacaataaa  TA-rich tract