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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttctaattagcacatcttgtcttcttctctactctaaattgactatactgttaaaataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACC

Basic information

species Glycine max
transcript GLYMA13G17920.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17920.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00890.t01 (Vitis vinifera), 3'ss of exon 10
---------------------------gtaactttctaatt-agcac--atcttgtcttcttctctactctaaattgactatac-tgttaaaataaa----------cagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACC
                            |  |||||   || |||    ||  | | |||| |   | | ||| |||   |||| |   ||  | ||          ||||||||||| ||||| ||||||||||| ||||| ||||||||||  || ||||| || || || ||||||||||  ||||||||||| || || |||||  
gtaactttctcatgacacaaacacatcctttctttcagtttcagcttctattctttgttctgcataattgtaagttgtacatacataacaatctgaatcttacttctcagACAGTTGCTCTGGTCGGAGAAAGTGGGAGTGGTAAATCAACAGCAATCTCACTGTTGCAGAGATTTTATGACCCGGATTCAGGTCATATCACTCTGGATG

upper sequence: GLYMA13G17920.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
------------------------------------------------gtaactttctaattagcacatcttgtcttcttctctactctaaattgactatactgttaaaataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACC
                                                  |  |  |||||| | |   | | | |   | |  |    | | |   ||| |||||        ||||||||||| |||||||||||||||||  |||||||||| || ||||| ||| || | || || |||||||| |  ||||||||||  || ||||||||  
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaatt-gaaagccatatatatatatacatctgagaatctgtatcctgtt-----tctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcacatcttgtcttcttctctactctaaattgactatactgttaaaataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACC
                            aattgac  putative branch site (score: 3)
                                   tatactgttaaaataa  TA-rich tract