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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttactaatttgcacatcttttcttcttcactactataattacttcttcctaaactaatagattgactatactgctataataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATG

Basic information

species Glycine max
transcript GLYMA13G17910.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17910.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00890.t01 (Vitis vinifera), 3'ss of exon 10
gtaacttactaattt-----gcacatcttttcttct--tcactactataattacttcttcc-taaactaatagattgactatac-tgctataataaa----------cagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATG
||||||| || ||        |||||| ||||||    |  |  ||   |||  || |||   | | |  ||  |||   |||| |   |   | ||          ||||||||||| ||||| ||||||||||| ||||| |||||||| |  |||||| | || || ||||||||||| || || |  ||| | || || |||||||
gtaactttctcatgacacaaacacatcctttctttcagtttcagcttctattctttgttctgcataattgtaagttgtacatacataacaatctgaatcttacttctcagACAGTTGCTCTGGTCGGAGAAAGTGGGAGTGGTAAATCAACAGCAATCTCACTGTTGCAGAGATTTTATGACCCGGATTCAGGTCATATCACTCTGGATG

upper sequence: GLYMA13G17910.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
------------------gtaacttactaatttgcacatcttttcttcttcactactataattacttcttcctaaactaatagat-tgactatac-tgctataataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATG
                  | ||||   |   |||  |   | || | |     | |   | | |   |    || |   ||| || |||  ||   |    |  |   ||||||||||| |||||||||||||||||  |||||||||| || |||||||||||| | || |||||||||||||| || |  |||   || ||||||||||
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actataattacttcttcctaaactaatagattgactatactgctataataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATG
                  taaactaatagatt  TA-rich tract