1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggcaaatgagattctcttgaatgactaattcttgggtagtgctattctttttttttttttacttgagcattctcaaactcgtgttaatttctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTGTGCGCTGCTTTCCTTTCACAGC
species | Glycine max |
transcript | GLYMA13G05700.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|7028125|gb|AW457908.1|AW457908
genomic: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|11688494|gb|BF596170.1|BF596170
genomic: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: ATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|58020231|gb|CX706973.1|CX706973
genomic: ATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: TGNAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAG CTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGEST: gi|58020051|gb|CX706793.1|CX706793
genomic: TG-AAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGgtaattatcc ... tctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAG
EST: TTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAG CTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGEST: gi|22540977|gb|BU090820.1|BU090820
genomic: TTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGgtaattatcc ... tctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAG
EST: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|193427695|gb|FK394379.1|FK394379
genomic: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: CTATAACATGAAGTGCAGATGGGTTGCTGGCAACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAEST: gi|58019920|gb|CX706662.1|CX706662
genomic: CTATAACATGAAGTGCAGATGGGTTGCTGGC-ACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGG-AA
EST: TTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAG CTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGEST: gi|7028139|gb|AW457922.1|AW457922
genomic: TTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGgtaattatcc ... tctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAG
EST: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|209725163|gb|BW659833.1|BW659833
genomic: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: AGTTTGAAGTGCAG CTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGEST: gi|7234476|gb|AW569813.1|AW569813
genomic: AGTTTGAAGTGCAGgtaattatcc ... tctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAG
EST: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAATEST: gi|254330249|gb|GR841514.1|GR841514
genomic: GAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
EST: TTG-AAATG-AGCTGTTTCT-AGTCAAATGT-GTC-AGTTTGAAGTGCAG CTTTACAAAACTCGTGA-GAGAAATATCTGCTTGATC-TCAAAGGGTCCAGEST: gi|193616494|gb|FK569764.1|FK569764
genomic: TTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGgtaattatcc ... tctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAG
EST: AATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
genomic: AATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTCTGCATAGTAATCATTACTTTGGAAAT
ttctttttttttttttacttgagcattctcaaactcgtgttaatttctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTGTGCGCTGCTTTCCTTTCACAGC
tgttaat putative branch site (score: 3)
tttcttt CT-rich tract
tttttttttttacttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaaatgagattctcttgaatgactaattcttgggtagtgctattctttttttttttttacttgagcattctcaaactcgtgttaatttctttgacagCTTTACAAAACTCGTGAGGAGAAATATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTGTGCGCTGCTTTCCTTTCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT