1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atttaacataaaaggaccaaaatattcatatcactatattttgcatattgtgagtgcttgtgctcgacatttattattacttctgtttgtgcataagtagGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTGGAAAATGGGGAATATGATATGGCAAATTCAGAAAAGTTGCGGCTAGAAC
species | Glycine max |
transcript | GLYMA13G02610.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTTACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAG GAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTGEST: gi|19346195|gb|BM891075.1|BM891075
genomic: ACTTTACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGgtcttttttt ... gcataagtagGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTG
EST: ACTTTACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAG GAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTG
genomic: ACTTTACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGgtcttttttt ... gcataagtagGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTG
tattgtgagtgcttgtgctcgacatttattattacttctgtttgtgcataagtagGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTGGAAAATGGGGAATATGATATGGCAAATTCAGAAAAGTTGCGGCTAGAAC
acatttattattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaacataaaaggaccaaaatattcatatcactatattttgcatattgtgagtgcttgtgctcgacatttattattacttctgtttgtgcataagtagGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGATCAGAGGCATTTGGAAAATGGGGAATATGATATGGCAAATTCAGAAAAGTTGCGGCTAGAAC
- - - - - - - -accaaaa
- - - - - - - - - - - - - catatca
- - - - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - -gtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc