1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttgcctaagataatacctcattaatgtgatatgaaagcattcaatctcatgttccatttatttataaaaaaatatagggattgtatagctgaaaatataagctaactaacttgatgaaactgttagtgttattcaaatttgatcatgattgactgaatagacttattggtgtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCACGCATCGTTTGTCATGGTGGAACTGATCTCTG
species | Glycine max |
transcript | GLYMA13G01360.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTEST: gi|192332064|gb|FK026344.1|FK026344
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
EST: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAATG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTEST: gi|51337091|gb|CO980957.1|CO980957
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
EST: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTEST: gi|302141303|gb|HO212179.1|HO212179
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
EST: GAAGTGGAGGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAG AGAGGCTTTGTTGAAGCTGATGTTGCCGACGGGCTCTTGGAAGTATTTGGTEST: gi|15203215|gb|BI425983.1|BI425983
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
EST: GAAGTGTAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTEST: gi|192332065|gb|FK026345.1|FK026345
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
EST: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAATG AGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
genomic: GAAGTGGAAGAAATCCATGGGGTAAACCAAAACCAGAATATTTGGAAAAGgtatgttgcc ... gtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGT
gtgttattcaaatttgatcatgattgactgaatagacttattggtgtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCACGCATCGTTTGTCATGGTGGAACTGATCTCTG
gattgac putative branch site (score: 3)
tacttcc putative PPT
attcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcctaagataatacctcattaatgtgatatgaaagcattcaatctcatgttccatttatttataaaaaaatatagggattgtatagctgaaaatataagctaactaacttgatgaaactgttagtgttattcaaatttgatcatgattgactgaatagacttattggtgtacttccagAGAGGCTTTGTTGAAGCTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCACGCATCGTTTGTCATGGTGGAACTGATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA