1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atctttgggcatatgtggctccaaatgcgttctgaatattctggtactcagaagaacaggctatatattaatattcaccattgtcgtactttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCAGTAGA
species | Glycine max |
transcript | GLYMA13G01190.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTATGCTGATATGCATTGTGCTTCAATAATAA GAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCEST: gi|151404424|gb|EV274234.1|EV274234
genomic: CCTATGCTGATATGCATTGTGCTTCAATAATAGgtgagaacca ... ttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATC
EST: ACTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAG GAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCEST: gi|27426723|gb|CA938243.1|CA938243
genomic: ACTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGgtgagaacca ... ttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATC
EST: AGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAG GAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATC
genomic: AGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGgtgagaacca ... ttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATC
actcagaagaacaggctatatattaatattcaccattgtcgtactttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCAGTAGA
tattaat putative branch site (score: 2)
ctttgttt putative PPT
tatatattaatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctttgggcatatgtggctccaaatgcgttctgaatattctggtactcagaagaacaggctatatattaatattcaccattgtcgtactttgtttgcagGAGGAATTGTCAACAACTCTTTACGTCCTCAAATTCCAACATGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCAGTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - gcatatg
- - - - - - - - - ctccaaa
- - - - - - - - - - - - -tgcgttc
- - - - - - - - - - - - - - - - - - - - ctggtac
- - - - - - - - - - - - - - - - - - - - - - - - - gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaccat