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...aaaaaaatgggacttggaacaattttggaccagttgaagttataatttacaactaattatgaaagatgggcgttatatggtcattgatctgcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAAGAAGGGGATCAGCCACTATATCTTTCAACGATATTCAGAAGCAATTTG
species | Glycine max |
transcript | GLYMA12G37130.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|6846254|gb|AW348544.1|AW348544
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|254345258|gb|GR855808.1|GR855808
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|192297062|gb|FG990333.1|FG990333
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGEST: gi|26057334|gb|CA800248.1|CA800248
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGG
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|6071750|gb|AW101137.1|AW101137
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|14990752|gb|BI316425.1|BI316425
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|15285724|gb|BI469615.1|BI469615
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|208246428|gb|GE050242.1|GE050242
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|51335049|gb|CO978915.1|CO978915
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAEST: gi|192299412|gb|FG992530.1|FG992530
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
EST: ATGATTCAATGTTTTTTGCAGAAGACGGCACTGTACCTGCAACATTCCAG GTTATATACATGACGGGGTGGAGAGAACATCCTTTTCAGCAGAAAGCAAAA
genomic: ATGATTCAATGTTTTCTGCAGAAGACGGCACTGTACCTGCAACATTCCAGgtaatcaaaa ... gcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAA
tttacaactaattatgaaagatgggcgttatatggtcattgatctgcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAAGAAGGGGATCAGCCACTATATCTTTCAACGATATTCAGAAGCAATTTG
tctgccttt CT-rich tract
aactaattatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaatgggacttggaacaattttggaccagttgaagttataatttacaactaattatgaaagatgggcgttatatggtcattgatctgcctttgtagGTTATATACATGACGGGGTGGAGAGAACATCCTTCTCAGCAGAAAGCAAAAAGAAGGGGATCAGCCACTATATCTTTCAACGATATTCAGAAGCAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA