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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttgaaaagtagtttcattatgctcattgctcatacaatattaaaaaaaaaatgtttatataattagcatagttttcactggcggcttcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCCCGGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGG

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 10
atttttgaaaagtagtttcattatgctcattgctcatacaatattaaaaaaaaaatgttt-atataattagcatagttttcactggcggcttcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCCCGGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGG
| || |  ||||    | | ||| |||         || ||| |  |||  |  ||| |  | ||  | |      ||  || | |     |  | |  || | || |||   |||||| | |||||||| ||||| || ||||||||||| || || || |||||||||||| | ||||| || |||||||| || || |
aattgtttaaagcttatgcttta-gctggaaaacagtataatctctaaagcagcatgctggacattttcaaagagcttagcatttggttgattatatgcagCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208087350|gb|GD887608.1|GD887608
EST:     GCTTCCTCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTC
genomic: GCTT-CTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTC
EST: gi|31456092|gb|CD398120.1|CD398120
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
EST: gi|31309866|gb|CD395069.1|CD395069
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
EST: gi|11687934|gb|BF595610.1|BF595610
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
EST: gi|31470238|gb|CD412206.1|CD412206
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaaaatgtttatataattagcatagttttcactggcggcttcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCCCGGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGG
                                           cttctttt  CT-rich tract
     aaaaatgtttatataa  TA-rich tract