1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaacccaacttttaatcgcaagtatgtggtacatgctaggttttggattttcaatcaagaatcagaagccgttattcctttcataatccatctttactgagtaatgatgaaagatgtaaaaatttattgatcaatactgatttgttttaactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT
species | Glycine max |
transcript | GLYMA12G29550.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCCTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|120534021|gb|EH262154.1|EH262154
genomic: GAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|58017030|gb|CX703772.1|CX703772
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|10844549|gb|BF067876.1|BF067876
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: CAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|58024880|gb|CX711621.1|CX711621
genomic: CAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CNTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|207773559|gb|GD744571.1|GD744571
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAGGAGTTTTEST: gi|254323994|gb|GR836226.1|GR836226
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|37995855|gb|CF807444.1|CF807444
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTEST: gi|57575124|gb|CX548099.1|CX548099
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
EST: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAG CCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
genomic: TTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGgtaaacccaa ... aactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTT
atgatgaaagatgtaaaaatttattgatcaatactgatttgttttaactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT
ttttaac putative branch site (score: 2)
taaaaatttattgatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacccaacttttaatcgcaagtatgtggtacatgctaggttttggattttcaatcaagaatcagaagccgttattcctttcataatccatctttactgagtaatgatgaaagatgtaaaaatttattgatcaatactgatttgttttaactttgcagCCTGATGGATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC